Code

Our team has developed various pieces of code, projects and tools that automate several parts of the analyses made in the field we are focusing on, such as genome assembly analyses.

Below, you can find information about them and their corresponding GitHub repositories and pages:

Sparidae_2019 by Paschalis Natsidis

Scripts used in Natsidis et al (2019)
https://github.com/pnatsi/Sparidae_2019
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Splash by Giannos Louloudis

A pipeline to identify Long Non-Coding RNAs in silico.
https://github.com/GiannosLouloudis/Splash
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De-Novo Genome Assembly Pipelines by Nellie Angelova

Web Page

User-guide for users of the De-Novo Genome Assembly Containerized Pipelines (HCMR)
https://github.com/nellieangelova/De-Novo_Genome_Assembly_Pipelines
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De-Novo Transcriptome Assembly Pipelines by Nellie Angelova

Web Page

User-guide for users of the De-Novo Transcriptome Assembly Containerized Pipelines (HCMR)
https://github.com/nellieangelova/De-Novo_Transcriptome_Assembly_Pipelines
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